No. words: 1067; after pruning: 1028


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 6.3 (1,1:367)  353  0.00 0.27 0.00  UCD013F_H05_BG274019Ta22P025D04P012F081F1_033.ab1        1   364 (53)  C UCD013R_H05_BG274019Ta22P025D04P012F081R1_033.ab1   (47)   369     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C UCD013R_H05_BG274019Ta22P025D04P012F081R1_033.ab1   416 
   79    UCD013F_H05_BG274019Ta22P025D04P012F081F1_033.ab1    31 
   83  C UCD013R_H05_BG274019Ta22P025D04P012F081R1_033.ab1   334 
  307    UCD013F_H05_BG274019Ta22P025D04P012F081F1_033.ab1   259 
Contig length: old 465, new 465

Contig length: old 465, new 465
New start: 0