No. words: 1128; after pruning: 1102


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:491)  474  0.00 0.00 0.00  UCD008F_C09_BG274365Sn27P001H04P021C081F1_075.ab1        1   492 (73)  C UCD008R_C09_BG274365Sn27P001H04P021C081F1_075.ab1   (71)   492     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C UCD008R_C09_BG274365Sn27P001H04P021C081F1_075.ab1   563 
   79    UCD008F_C09_BG274365Sn27P001H04P021C081F1_075.ab1     8 
   83  C UCD008R_C09_BG274365Sn27P001H04P021C081F1_075.ab1   481 
   99    UCD008F_C09_BG274365Sn27P001H04P021C081F1_075.ab1    28 
  147  C UCD008R_C09_BG274365Sn27P001H04P021C081F1_075.ab1   417 
  163    UCD008F_C09_BG274365Sn27P001H04P021C081F1_075.ab1    92 
  183  C UCD008R_C09_BG274365Sn27P001H04P021C081F1_075.ab1   381 
  187    UCD008F_C09_BG274365Sn27P001H04P021C081F1_075.ab1   116 
Contig length: old 636, new 636

Contig length: old 636, new 636
New start: 0