No. words: 1132; after pruning: 1106


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.0 (1,1:492)  468  0.41 0.00 0.00  UCD008F_E09_BG274365Sn29P001H04P021C081F1_071.ab1        1   492 (82)  C UCD008R_E09_BG274365Sn29P001H04P021C081F1_071.ab1   (65)   493     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C UCD008R_E09_BG274365Sn29P001H04P021C081F1_071.ab1   558 
   77    UCD008F_E09_BG274365Sn29P001H04P021C081F1_071.ab1    12 
Contig length: old 639, new 639

Contig length: old 639, new 639
New start: 0 
S Change at: 73; seg lengths: entry 1, contig 1