No. words: 1125; after pruning: 1099


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:482)  458  0.62 0.00 0.00  UCD008F_G09_BG274365Sn31P001H04P021C081F1_067.ab1        1   483 (86)  C UCD008R_G09_BG274365Sn31P001H04P021C081F1_067.ab1   (73)   483     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C UCD008R_G09_BG274365Sn31P001H04P021C081F1_067.ab1   556 
   99    UCD008F_G09_BG274365Sn31P001H04P021C081F1_067.ab1    26 
Contig length: old 642, new 642

Contig length: old 642, new 642
New start: 0