No. words: 1131; after pruning: 1105


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.2 (1,1:484)  460  0.62 0.00 0.00  UCD008F_H09_BG274365Sn32P001H04P021C081F1_065.ab1        1   485 (91)  C UCD008R_H09_BG274365Sn32P001H04P021C081F1_065.ab1   (70)   485     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C UCD008R_H09_BG274365Sn32P001H04P021C081F1_065.ab1   555 
   82    UCD008F_H09_BG274365Sn32P001H04P021C081F1_065.ab1    12 
   90  C UCD008R_H09_BG274365Sn32P001H04P021C081F1_065.ab1   466 
   98    UCD008F_H09_BG274365Sn32P001H04P021C081F1_065.ab1    28 
Contig length: old 646, new 646

Contig length: old 646, new 646
New start: 0 
S Change at: 78; seg lengths: entry 1, contig 1