No. words: 1139; after pruning: 1113


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.3 (1,1:507)  489  0.00 0.00 0.00  UCD008F_D07_BG274365Ta12P001H04P021C081F1_057.ab1        1   508 (65)  C UCD008R_D07_BG274365Ta12P001H04P021C081F1_057.ab1   (58)   508     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C UCD008R_D07_BG274365Ta12P001H04P021C081F1_057.ab1   566 
   70    UCD008F_D07_BG274365Ta12P001H04P021C081F1_057.ab1    12 
   78  C UCD008R_D07_BG274365Ta12P001H04P021C081F1_057.ab1   489 
   94    UCD008F_D07_BG274365Ta12P001H04P021C081F1_057.ab1    36 
   98  C UCD008R_D07_BG274365Ta12P001H04P021C081F1_057.ab1   469 
  102    UCD008F_D07_BG274365Ta12P001H04P021C081F1_057.ab1    44 
  106  C UCD008R_D07_BG274365Ta12P001H04P021C081F1_057.ab1   461 
  114    UCD008F_D07_BG274365Ta12P001H04P021C081F1_057.ab1    56 
  122  C UCD008R_D07_BG274365Ta12P001H04P021C081F1_057.ab1   445 
  126    UCD008F_D07_BG274365Ta12P001H04P021C081F1_057.ab1    68 
  130  C UCD008R_D07_BG274365Ta12P001H04P021C081F1_057.ab1   437 
  134    UCD008F_D07_BG274365Ta12P001H04P021C081F1_057.ab1    76 
  146  C UCD008R_D07_BG274365Ta12P001H04P021C081F1_057.ab1   421 
  154    UCD008F_D07_BG274365Ta12P001H04P021C081F1_057.ab1    96 
  158  C UCD008R_D07_BG274365Ta12P001H04P021C081F1_057.ab1   409 
  162    UCD008F_D07_BG274365Ta12P001H04P021C081F1_057.ab1   104 
  178  C UCD008R_D07_BG274365Ta12P001H04P021C081F1_057.ab1   389 
  182    UCD008F_D07_BG274365Ta12P001H04P021C081F1_057.ab1   124 
Contig length: old 631, new 631

Contig length: old 631, new 631
New start: 0