No. words: 1131; after pruning: 1105


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:506)  488  0.00 0.00 0.00  UCD008F_F07_BG274365Ta14P001H04P021C081F1_053.ab1        1   507 (66)  C UCD008R_F07_BG274365Ta14P001H04P021C081F1_053.ab1   (51)   507     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C UCD008R_F07_BG274365Ta14P001H04P021C081F1_053.ab1   558 
   67    UCD008F_F07_BG274365Ta14P001H04P021C081F1_053.ab1    16 
   79  C UCD008R_F07_BG274365Ta14P001H04P021C081F1_053.ab1   480 
   87    UCD008F_F07_BG274365Ta14P001H04P021C081F1_053.ab1    36 
   91  C UCD008R_F07_BG274365Ta14P001H04P021C081F1_053.ab1   468 
   95    UCD008F_F07_BG274365Ta14P001H04P021C081F1_053.ab1    44 
   99  C UCD008R_F07_BG274365Ta14P001H04P021C081F1_053.ab1   460 
  107    UCD008F_F07_BG274365Ta14P001H04P021C081F1_053.ab1    56 
  135  C UCD008R_F07_BG274365Ta14P001H04P021C081F1_053.ab1   424 
  155    UCD008F_F07_BG274365Ta14P001H04P021C081F1_053.ab1   104 
Contig length: old 624, new 624

Contig length: old 624, new 624
New start: 0