No. words: 1135; after pruning: 1109


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.5 (1,1:512)  490  0.00 0.00 0.00  UCD008F_D08_BG274365Ta20P001H04P021C081F1_058.ab1        1   510 (59)  C UCD008R_D08_BG274365Ta20P001H04P021C081F1_058.ab1   (53)   513     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C UCD008R_D08_BG274365Ta20P001H04P021C081F1_058.ab1   566 
   69    UCD008F_D08_BG274365Ta20P001H04P021C081F1_058.ab1    16 
   73  C UCD008R_D08_BG274365Ta20P001H04P021C081F1_058.ab1   494 
   89    UCD008F_D08_BG274365Ta20P001H04P021C081F1_058.ab1    36 
   93  C UCD008R_D08_BG274365Ta20P001H04P021C081F1_058.ab1   474 
   97    UCD008F_D08_BG274365Ta20P001H04P021C081F1_058.ab1    44 
  101  C UCD008R_D08_BG274365Ta20P001H04P021C081F1_058.ab1   466 
  109    UCD008F_D08_BG274365Ta20P001H04P021C081F1_058.ab1    56 
  129  C UCD008R_D08_BG274365Ta20P001H04P021C081F1_058.ab1   438 
  165    UCD008F_D08_BG274365Ta20P001H04P021C081F1_058.ab1   112 
Contig length: old 622, new 622

Contig length: old 622, new 622
New start: 0