No. words: 1126; after pruning: 1100


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.0 (1,1:497)  476  0.00 0.00 0.00  UCD008F_E08_BG274365Ta21P001H04P021C081F1_056.ab1        1   495 (72)  C UCD008R_E08_BG274365Ta21P001H04P021C081F1_056.ab1   (61)   498     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C UCD008R_E08_BG274365Ta21P001H04P021C081F1_056.ab1   559 
   69    UCD008F_E08_BG274365Ta21P001H04P021C081F1_056.ab1     8 
   81  C UCD008R_E08_BG274365Ta21P001H04P021C081F1_056.ab1   479 
   89    UCD008F_E08_BG274365Ta21P001H04P021C081F1_056.ab1    28 
  141  C UCD008R_E08_BG274365Ta21P001H04P021C081F1_056.ab1   419 
  153    UCD008F_E08_BG274365Ta21P001H04P021C081F1_056.ab1    92 
Contig length: old 628, new 628

Contig length: old 628, new 628
New start: 0