No. words: 1144; after pruning: 1118


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 10.6 (1,1:517)  491  0.00 0.00 0.00  UCD008F_G08_BG274365Ta23P001H04P021C081F1_052.ab1        8   518 (62)  C UCD008R_G08_BG274365Ta23P001H04P021C081F1_052.ab1   (53)   511     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C UCD008R_G08_BG274365Ta23P001H04P021C081F1_052.ab1   564 
   69    UCD008F_G08_BG274365Ta23P001H04P021C081F1_052.ab1    23 
   73  C UCD008R_G08_BG274365Ta23P001H04P021C081F1_052.ab1   492 
   89    UCD008F_G08_BG274365Ta23P001H04P021C081F1_052.ab1    43 
   93  C UCD008R_G08_BG274365Ta23P001H04P021C081F1_052.ab1   472 
   97    UCD008F_G08_BG274365Ta23P001H04P021C081F1_052.ab1    51 
  137  C UCD008R_G08_BG274365Ta23P001H04P021C081F1_052.ab1   428 
  153    UCD008F_G08_BG274365Ta23P001H04P021C081F1_052.ab1   107 
  213  C UCD008R_G08_BG274365Ta23P001H04P021C081F1_052.ab1   352 
  217    UCD008F_G08_BG274365Ta23P001H04P021C081F1_052.ab1   171 
Contig length: old 626, new 626

Contig length: old 626, new 626
New start: 0