No. words: 1326; after pruning: 1300


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.4 (1,1:672)  597  0.00 0.00 0.00  UCD006R_C11_BG313179AS01P012D01P012D071F1_091.ab1        1   605 (0)  C UCD006F_C11_BG313179AS01P012D01P012D071F1_091.ab1   (48)   673    69 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1  C UCD006F_C11_BG313179AS01P012D01P012D071F1_091.ab1   721 
   61    UCD006R_C11_BG313179AS01P012D01P012D071F1_091.ab1    13 
   65  C UCD006F_C11_BG313179AS01P012D01P012D071F1_091.ab1   657 
   69    UCD006R_C11_BG313179AS01P012D01P012D071F1_091.ab1    21 
  185  C UCD006F_C11_BG313179AS01P012D01P012D071F1_091.ab1   537 
  201    UCD006R_C11_BG313179AS01P012D01P012D071F1_091.ab1   153 
  437  C UCD006F_C11_BG313179AS01P012D01P012D071F1_091.ab1   285 
Contig length: old 721, new 721

Contig length: old 721, new 721
New start: 0