No. words: 1416; after pruning: 1390


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.6 (1,1:662)  651  0.15 0.00 0.00  UCD006R_D11_BG313179AS02P012D01P012D071F1_089.ab1        1   663 (51)  C UCD006F_D11_BG313179AS02P012D01P012D071F1_089.ab1   (39)   663     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  330 nodes

 167 str. conn. components

Path
    1  C UCD006F_D11_BG313179AS02P012D01P012D071F1_089.ab1   702 
   59    UCD006R_D11_BG313179AS02P012D01P012D071F1_089.ab1    20 
   67  C UCD006F_D11_BG313179AS02P012D01P012D071F1_089.ab1   636 
   71    UCD006R_D11_BG313179AS02P012D01P012D071F1_089.ab1    32 
   75  C UCD006F_D11_BG313179AS02P012D01P012D071F1_089.ab1   628 
   85    UCD006R_D11_BG313179AS02P012D01P012D071F1_089.ab1    46 
  121  C UCD006F_D11_BG313179AS02P012D01P012D071F1_089.ab1   582 
  125    UCD006R_D11_BG313179AS02P012D01P012D071F1_089.ab1    86 
  177  C UCD006F_D11_BG313179AS02P012D01P012D071F1_089.ab1   526 
  181    UCD006R_D11_BG313179AS02P012D01P012D071F1_089.ab1   142 
  461  C UCD006F_D11_BG313179AS02P012D01P012D071F1_089.ab1   242 
  545    UCD006R_D11_BG313179AS02P012D01P012D071F1_089.ab1   506 
  549  C UCD006F_D11_BG313179AS02P012D01P012D071F1_089.ab1   154 
  597    UCD006R_D11_BG313179AS02P012D01P012D071F1_089.ab1   558 
  601  C UCD006F_D11_BG313179AS02P012D01P012D071F1_089.ab1   102 
  605    UCD006R_D11_BG313179AS02P012D01P012D071F1_089.ab1   566 
  609  C UCD006F_D11_BG313179AS02P012D01P012D071F1_089.ab1    94 
  689    UCD006R_D11_BG313179AS02P012D01P012D071F1_089.ab1   650 
  693  C UCD006F_D11_BG313179AS02P012D01P012D071F1_089.ab1    10 
  697    UCD006R_D11_BG313179AS02P012D01P012D071F1_089.ab1   658 
Contig length: old 753, new 753

Contig length: old 753, new 753
New start: 0