No. words: 1172; after pruning: 1146


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.2 (1,1:683)  468  0.82 0.00 0.00  UCD006R_F11_BG313179AT02P012D01P012D071F1_085.ab1      170   657 (0)  C UCD006F_F11_BG313179AT02P012D01P012D071F1_085.ab1   (0)   515    28 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1    UCD006R_F11_BG313179AT02P012D01P012D071F1_085.ab1     1 
  375  C UCD006F_F11_BG313179AT02P012D01P012D071F1_085.ab1   310 
  383    UCD006R_F11_BG313179AT02P012D01P012D071F1_085.ab1   383 
  415  C UCD006F_F11_BG313179AT02P012D01P012D071F1_085.ab1   270 
  427    UCD006R_F11_BG313179AT02P012D01P012D071F1_085.ab1   427 
  431  C UCD006F_F11_BG313179AT02P012D01P012D071F1_085.ab1   254 
  467    UCD006R_F11_BG313179AT02P012D01P012D071F1_085.ab1   467 
  479  C UCD006F_F11_BG313179AT02P012D01P012D071F1_085.ab1   206 
  487    UCD006R_F11_BG313179AT02P012D01P012D071F1_085.ab1   487 
  495  C UCD006F_F11_BG313179AT02P012D01P012D071F1_085.ab1   190 
  531    UCD006R_F11_BG313179AT02P012D01P012D071F1_085.ab1   531 
  539  C UCD006F_F11_BG313179AT02P012D01P012D071F1_085.ab1   146 
Contig length: old 684, new 684

Contig length: old 684, new 684
New start: 0