No. words: 1554; after pruning: 1514


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 12.0 (1,1:632)  612  0.00 0.00 0.32  UCD006R_B12_BG313179LD03P012D01P012D071F1_094.ab1        3   634 (183)  C UCD006F_B12_BG313179LD03P012D01P012D071F1_094.ab1   (107)   630     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C UCD006F_B12_BG313179LD03P012D01P012D071F1_094.ab1   737 
  141    UCD006R_B12_BG313179LD03P012D01P012D071F1_094.ab1    36 
  169  C UCD006F_B12_BG313179LD03P012D01P012D071F1_094.ab1   569 
  177    UCD006R_B12_BG313179LD03P012D01P012D071F1_094.ab1    72 
  209  C UCD006F_B12_BG313179LD03P012D01P012D071F1_094.ab1   529 
  613    UCD006R_B12_BG313179LD03P012D01P012D071F1_094.ab1   508 
  617  C UCD006F_B12_BG313179LD03P012D01P012D071F1_094.ab1   121 
  621    UCD006R_B12_BG313179LD03P012D01P012D071F1_094.ab1   516 
  625  C UCD006F_B12_BG313179LD03P012D01P012D071F1_094.ab1   113 
  653    UCD006R_B12_BG313179LD03P012D01P012D071F1_094.ab1   548 
  665  C UCD006F_B12_BG313179LD03P012D01P012D071F1_094.ab1    73 
  713    UCD006R_B12_BG313179LD03P012D01P012D071F1_094.ab1   608 
Contig length: old 921, new 922

Contig length: old 922, new 922
New start: 0 
S Change at: 85; seg lengths: entry 1, contig 1