No. words: 1595; after pruning: 1541


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.4 (1,1:646)  637  0.00 0.00 0.00  UCD006R_C12_BG313179LD04P012D01P012D071F1_092.ab1        1   647 (189)  C UCD006F_C12_BG313179LD04P012D01P012D071F1_092.ab1   (112)   647     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C UCD006F_C12_BG313179LD04P012D01P012D071F1_092.ab1   759 
  121    UCD006R_C12_BG313179LD04P012D01P012D071F1_092.ab1     9 
  125  C UCD006F_C12_BG313179LD04P012D01P012D071F1_092.ab1   635 
  133    UCD006R_C12_BG313179LD04P012D01P012D071F1_092.ab1    21 
  517  C UCD006F_C12_BG313179LD04P012D01P012D071F1_092.ab1   243 
  665    UCD006R_C12_BG313179LD04P012D01P012D071F1_092.ab1   553 
  669  C UCD006F_C12_BG313179LD04P012D01P012D071F1_092.ab1    91 
  697    UCD006R_C12_BG313179LD04P012D01P012D071F1_092.ab1   585 
  701  C UCD006F_C12_BG313179LD04P012D01P012D071F1_092.ab1    59 
  753    UCD006R_C12_BG313179LD04P012D01P012D071F1_092.ab1   641 
Contig length: old 948, new 948

Contig length: old 948, new 948
New start: 0 
S Change at: 85; seg lengths: entry 1, contig 1
S Change at: 762; seg lengths: entry 1, contig 1