No. words: 1646; after pruning: 1592


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 13.8 (1,1:668)  649  0.00 0.00 0.15  UCD006R_D12_BG313179LD05P012D01P012D071F1_090.ab1        5   669 (190)  C UCD006F_D12_BG313179LD05P012D01P012D071F1_090.ab1   (123)   664     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1  C UCD006F_D12_BG313179LD05P012D01P012D071F1_090.ab1   787 
  159    UCD006R_D12_BG313179LD05P012D01P012D071F1_090.ab1    40 
  187  C UCD006F_D12_BG313179LD05P012D01P012D071F1_090.ab1   601 
  191    UCD006R_D12_BG313179LD05P012D01P012D071F1_090.ab1    72 
  259  C UCD006F_D12_BG313179LD05P012D01P012D071F1_090.ab1   529 
  463    UCD006R_D12_BG313179LD05P012D01P012D071F1_090.ab1   344 
  675  C UCD006F_D12_BG313179LD05P012D01P012D071F1_090.ab1   113 
  683    UCD006R_D12_BG313179LD05P012D01P012D071F1_090.ab1   564 
  687  C UCD006F_D12_BG313179LD05P012D01P012D071F1_090.ab1   101 
  711    UCD006R_D12_BG313179LD05P012D01P012D071F1_090.ab1   592 
  715  C UCD006F_D12_BG313179LD05P012D01P012D071F1_090.ab1    73 
  755    UCD006R_D12_BG313179LD05P012D01P012D071F1_090.ab1   636 
  763  C UCD006F_D12_BG313179LD05P012D01P012D071F1_090.ab1    25 
  771    UCD006R_D12_BG313179LD05P012D01P012D071F1_090.ab1   652 
Contig length: old 977, new 978

Contig length: old 978, new 978
New start: 0 
S Change at: 99; seg lengths: entry 1, contig 1
S Change at: 915; seg lengths: entry 1, contig 1