No. words: 1569; after pruning: 1543


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 12.3 (1,1:632)  612  0.00 0.00 0.32  UCD006R_G12_BG313179LD08P012D01P012D071F1_084.ab1        3   634 (182)  C UCD006F_G12_BG313179LD08P012D01P012D071F1_084.ab1   (123)   630     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C UCD006F_G12_BG313179LD08P012D01P012D071F1_084.ab1   753 
  149    UCD006R_G12_BG313179LD08P012D01P012D071F1_084.ab1    28 
  189  C UCD006F_G12_BG313179LD08P012D01P012D071F1_084.ab1   565 
  197    UCD006R_G12_BG313179LD08P012D01P012D071F1_084.ab1    76 
  229  C UCD006F_G12_BG313179LD08P012D01P012D071F1_084.ab1   525 
  273    UCD006R_G12_BG313179LD08P012D01P012D071F1_084.ab1   152 
  445  C UCD006F_G12_BG313179LD08P012D01P012D071F1_084.ab1   309 
  629    UCD006R_G12_BG313179LD08P012D01P012D071F1_084.ab1   508 
  633  C UCD006F_G12_BG313179LD08P012D01P012D071F1_084.ab1   121 
  717    UCD006R_G12_BG313179LD08P012D01P012D071F1_084.ab1   596 
  721  C UCD006F_G12_BG313179LD08P012D01P012D071F1_084.ab1    33 
  729    UCD006R_G12_BG313179LD08P012D01P012D071F1_084.ab1   608 
Contig length: old 936, new 937

Contig length: old 937, new 937
New start: 0