No. words: 1347; after pruning: 1307


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.5 (1,1:628)  600  0.00 0.00 0.00  UCD007F_A01_BG313179LD09P012D01P012D071F1_015.ab1       22   629 (110)  C UCD007R_A01_BG313179LD09P012D01P012D071R1_015.ab1   (0)   608     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1    UCD007F_A01_BG313179LD09P012D01P012D071F1_015.ab1     1 
   81  C UCD007R_A01_BG313179LD09P012D01P012D071R1_015.ab1   549 
   85    UCD007F_A01_BG313179LD09P012D01P012D071F1_015.ab1    85 
  125  C UCD007R_A01_BG313179LD09P012D01P012D071R1_015.ab1   505 
  129    UCD007F_A01_BG313179LD09P012D01P012D071F1_015.ab1   129 
  365  C UCD007R_A01_BG313179LD09P012D01P012D071R1_015.ab1   265 
  561    UCD007F_A01_BG313179LD09P012D01P012D071F1_015.ab1   561 
  569  C UCD007R_A01_BG313179LD09P012D01P012D071R1_015.ab1    61 
  609    UCD007F_A01_BG313179LD09P012D01P012D071F1_015.ab1   609 
  613  C UCD007R_A01_BG313179LD09P012D01P012D071R1_015.ab1    17 
  621    UCD007F_A01_BG313179LD09P012D01P012D071F1_015.ab1   621 
Contig length: old 739, new 739

Contig length: old 739, new 739
New start: 0 
S Change at: 655; seg lengths: entry 1, contig 1