No. words: 1566; after pruning: 1512


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.0 (1,1:628)  620  0.00 0.00 0.00  UCD007F_B01_BG313179LD10P012D01P012D071F1_013.ab1        1   629 (126)  C UCD007R_B01_BG313179LD10P012D01P012D071R1_013.ab1   (182)   629     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1  C UCD007R_B01_BG313179LD10P012D01P012D071R1_013.ab1   811 
  210    UCD007F_B01_BG313179LD10P012D01P012D071F1_013.ab1    28 
  214  C UCD007R_B01_BG313179LD10P012D01P012D071R1_013.ab1   598 
  222    UCD007F_B01_BG313179LD10P012D01P012D071F1_013.ab1    40 
  226  C UCD007R_B01_BG313179LD10P012D01P012D071R1_013.ab1   586 
  234    UCD007F_B01_BG313179LD10P012D01P012D071F1_013.ab1    52 
  246  C UCD007R_B01_BG313179LD10P012D01P012D071R1_013.ab1   566 
  250    UCD007F_B01_BG313179LD10P012D01P012D071F1_013.ab1    68 
  258  C UCD007R_B01_BG313179LD10P012D01P012D071R1_013.ab1   554 
  286    UCD007F_B01_BG313179LD10P012D01P012D071F1_013.ab1   104 
  294  C UCD007R_B01_BG313179LD10P012D01P012D071R1_013.ab1   518 
  662    UCD007F_B01_BG313179LD10P012D01P012D071F1_013.ab1   480 
  762  C UCD007R_B01_BG313179LD10P012D01P012D071R1_013.ab1    50 
  766    UCD007F_B01_BG313179LD10P012D01P012D071F1_013.ab1   584 
  770  C UCD007R_B01_BG313179LD10P012D01P012D071R1_013.ab1    42 
  782    UCD007F_B01_BG313179LD10P012D01P012D071F1_013.ab1   600 
Contig length: old 937, new 937

Contig length: old 937, new 937
New start: 0 
S Change at: 63; seg lengths: entry 1, contig 1
S Change at: 837; seg lengths: entry 1, contig 1