No. words: 1329; after pruning: 1303


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 12.0 (1,1:613)  593  0.00 0.00 0.33  UCD006R_A11_BG313179TU01P012D01P012D071F1_095.ab1        1   612 (37)  C UCD006F_A11_BG313179TU01P012D01P012D071F1_095.ab1   (67)   613     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1  C UCD006F_A11_BG313179TU01P012D01P012D071F1_095.ab1   680 
   83    UCD006R_A11_BG313179TU01P012D01P012D071F1_095.ab1    16 
  115  C UCD006F_A11_BG313179TU01P012D01P012D071F1_095.ab1   566 
  123    UCD006R_A11_BG313179TU01P012D01P012D071F1_095.ab1    56 
  187  C UCD006F_A11_BG313179TU01P012D01P012D071F1_095.ab1   494 
  227    UCD006R_A11_BG313179TU01P012D01P012D071F1_095.ab1   160 
  231  C UCD006F_A11_BG313179TU01P012D01P012D071F1_095.ab1   450 
  251    UCD006R_A11_BG313179TU01P012D01P012D071F1_095.ab1   184 
  295  C UCD006F_A11_BG313179TU01P012D01P012D071F1_095.ab1   386 
  507    UCD006R_A11_BG313179TU01P012D01P012D071F1_095.ab1   440 
  523  C UCD006F_A11_BG313179TU01P012D01P012D071F1_095.ab1   158 
  603    UCD006R_A11_BG313179TU01P012D01P012D071F1_095.ab1   536 
  607  C UCD006F_A11_BG313179TU01P012D01P012D071F1_095.ab1    74 
  643    UCD006R_A11_BG313179TU01P012D01P012D071F1_095.ab1   576 
  647  C UCD006F_A11_BG313179TU01P012D01P012D071F1_095.ab1    34 
  655    UCD006R_A11_BG313179TU01P012D01P012D071F1_095.ab1   588 
Contig length: old 715, new 716

Contig length: old 716, new 716
New start: 0