No. words: 1187; after pruning: 1161


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:550)  525  0.18 0.18 0.18  UCD024F_E08_BG313362AS01P012E03P012E091F1_056.ab1        1   551 (43)  C UCD024R_E08_BG313362AS01P012E03P012E091R1_056.ab1   (42)   551     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C UCD024R_E08_BG313362AS01P012E03P012E091R1_056.ab1   593 
   78    UCD024F_E08_BG313362AS01P012E03P012E091F1_056.ab1    35 
   82  C UCD024R_E08_BG313362AS01P012E03P012E091R1_056.ab1   512 
   90    UCD024F_E08_BG313362AS01P012E03P012E091F1_056.ab1    47 
   98  C UCD024R_E08_BG313362AS01P012E03P012E091R1_056.ab1   496 
  106    UCD024F_E08_BG313362AS01P012E03P012E091F1_056.ab1    63 
  114  C UCD024R_E08_BG313362AS01P012E03P012E091R1_056.ab1   480 
  118    UCD024F_E08_BG313362AS01P012E03P012E091F1_056.ab1    75 
  130  C UCD024R_E08_BG313362AS01P012E03P012E091R1_056.ab1   464 
  134    UCD024F_E08_BG313362AS01P012E03P012E091F1_056.ab1    91 
  142  C UCD024R_E08_BG313362AS01P012E03P012E091R1_056.ab1   452 
  150    UCD024F_E08_BG313362AS01P012E03P012E091F1_056.ab1   107 
  158  C UCD024R_E08_BG313362AS01P012E03P012E091R1_056.ab1   436 
  166    UCD024F_E08_BG313362AS01P012E03P012E091F1_056.ab1   123 
  186  C UCD024R_E08_BG313362AS01P012E03P012E091R1_056.ab1   408 
  194    UCD024F_E08_BG313362AS01P012E03P012E091F1_056.ab1   151 
  206  C UCD024R_E08_BG313362AS01P012E03P012E091R1_056.ab1   388 
  210    UCD024F_E08_BG313362AS01P012E03P012E091F1_056.ab1   167 
  290  C UCD024R_E08_BG313362AS01P012E03P012E091R1_056.ab1   304 
  298    UCD024F_E08_BG313362AS01P012E03P012E091F1_056.ab1   255 
  334  C UCD024R_E08_BG313362AS01P012E03P012E091R1_056.ab1   260 
  342    UCD024F_E08_BG313362AS01P012E03P012E091F1_056.ab1   299 
Contig length: old 636, new 637

Contig length: old 637, new 637
New start: 0