No. words: 807; after pruning: 781


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.5 (1,1:563)   95  2.40 0.00 1.60  UCD024F_B09_BG313362LD02P012E03P012E091F1_077.ab1      441   565 (119)  C UCD024R_B09_BG313362LD02P012E03P012E091R1_077.ab1   (0)   123     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  54 nodes

 29 str. conn. components

Path
    1    UCD024F_B09_BG313362LD02P012E03P012E091F1_077.ab1     1 
  503  C UCD024R_B09_BG313362LD02P012E03P012E091R1_077.ab1    61 
  511    UCD024F_B09_BG313362LD02P012E03P012E091F1_077.ab1   511 
  534  C UCD024R_B09_BG313362LD02P012E03P012E091R1_077.ab1    31 
  538    UCD024F_B09_BG313362LD02P012E03P012E091F1_077.ab1   538 
Contig length: old 684, new 684

Contig length: old 684, new 684
New start: 0