No. words: 1183; after pruning: 1157


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:555)  499  0.19 0.00 0.19  UCD024F_C09_BG313362LD03P012E03P012E091F1_075.ab1       36   557 (105)  C UCD024R_C09_BG313362LD03P012E03P012E091R1_075.ab1   (0)   521     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  258 nodes

 131 str. conn. components

Path
    1    UCD024F_C09_BG313362LD03P012E03P012E091F1_075.ab1     1 
  479  C UCD024R_C09_BG313362LD03P012E03P012E091R1_075.ab1    78 
  503    UCD024F_C09_BG313362LD03P012E03P012E091F1_075.ab1   503 
Contig length: old 662, new 662

Contig length: old 662, new 662
New start: 0