No. words: 1083; after pruning: 1057


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 5.6 (1,1:560)  348  0.82 0.00 0.00  UCD016F_D08_BG313362LD05P012E03E091F1_058.ab1        5   368 (0)  C UCD016R_D08_BG313362LD05P012E03E091R1_058.ab1   (158)   557   194 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1  C UCD016R_D08_BG313362LD05P012E03E091R1_058.ab1   715 
  178    UCD016F_D08_BG313362LD05P012E03E091F1_058.ab1    24 
  182  C UCD016R_D08_BG313362LD05P012E03E091R1_058.ab1   534 
  186    UCD016F_D08_BG313362LD05P012E03E091F1_058.ab1    32 
  194  C UCD016R_D08_BG313362LD05P012E03E091R1_058.ab1   522 
  198    UCD016F_D08_BG313362LD05P012E03E091F1_058.ab1    44 
  214  C UCD016R_D08_BG313362LD05P012E03E091R1_058.ab1   502 
  218    UCD016F_D08_BG313362LD05P012E03E091F1_058.ab1    64 
  222  C UCD016R_D08_BG313362LD05P012E03E091R1_058.ab1   494 
  230    UCD016F_D08_BG313362LD05P012E03E091F1_058.ab1    76 
  266  C UCD016R_D08_BG313362LD05P012E03E091R1_058.ab1   450 
  294    UCD016F_D08_BG313362LD05P012E03E091F1_058.ab1   140 
  298  C UCD016R_D08_BG313362LD05P012E03E091R1_058.ab1   418 
  302    UCD016F_D08_BG313362LD05P012E03E091F1_058.ab1   148 
  338  C UCD016R_D08_BG313362LD05P012E03E091R1_058.ab1   378 
  342    UCD016F_D08_BG313362LD05P012E03E091F1_058.ab1   188 
  346  C UCD016R_D08_BG313362LD05P012E03E091R1_058.ab1   370 
Contig length: old 715, new 715

Contig length: old 715, new 715
New start: 0