No. words: 1081; after pruning: 1055


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:370)  356  0.54 0.00 0.27  UCD004F_C09_BG313738LD01P012C02C081F1_075.ab1        1   371 (204)  C UCD004R_C09_BG313738LD01P012C02C081R1_075.ab1   (136)   370     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  178 nodes

 91 str. conn. components

Path
    1  C UCD004R_C09_BG313738LD01P012C02C081R1_075.ab1   506 
  152    UCD004F_C09_BG313738LD01P012C02C081F1_075.ab1    16 
  160  C UCD004R_C09_BG313738LD01P012C02C081R1_075.ab1   347 
  239    UCD004F_C09_BG313738LD01P012C02C081F1_075.ab1   103 
  251  C UCD004R_C09_BG313738LD01P012C02C081R1_075.ab1   256 
  259    UCD004F_C09_BG313738LD01P012C02C081F1_075.ab1   123 
  319  C UCD004R_C09_BG313738LD01P012C02C081R1_075.ab1   188 
  355    UCD004F_C09_BG313738LD01P012C02C081F1_075.ab1   219 
  383  C UCD004R_C09_BG313738LD01P012C02C081R1_075.ab1   124 
  419    UCD004F_C09_BG313738LD01P012C02C081F1_075.ab1   283 
  463  C UCD004R_C09_BG313738LD01P012C02C081R1_075.ab1    44 
  487    UCD004F_C09_BG313738LD01P012C02C081F1_075.ab1   351 
Contig length: old 710, new 711

Contig length: old 711, new 711
New start: 0