No. words: 1063; after pruning: 1037


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.3 (1,1:361)  343  0.55 0.00 0.55  UCD004F_D09_BG313738LD02P012C02C081F1_073.ab1        1   362 (203)  C UCD004R_D09_BG313738LD02P012C02C081R1_073.ab1   (138)   360     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  172 nodes

 88 str. conn. components

Path
    1  C UCD004R_D09_BG313738LD02P012C02C081R1_073.ab1   498 
  266    UCD004F_D09_BG313738LD02P012C02C081F1_073.ab1   129 
  274  C UCD004R_D09_BG313738LD02P012C02C081R1_073.ab1   225 
  278    UCD004F_D09_BG313738LD02P012C02C081F1_073.ab1   141 
  318  C UCD004R_D09_BG313738LD02P012C02C081R1_073.ab1   181 
  342    UCD004F_D09_BG313738LD02P012C02C081F1_073.ab1   206 
  346  C UCD004R_D09_BG313738LD02P012C02C081R1_073.ab1   153 
  350    UCD004F_D09_BG313738LD02P012C02C081F1_073.ab1   214 
  354  C UCD004R_D09_BG313738LD02P012C02C081R1_073.ab1   145 
  358    UCD004F_D09_BG313738LD02P012C02C081F1_073.ab1   222 
  362  C UCD004R_D09_BG313738LD02P012C02C081R1_073.ab1   137 
  378    UCD004F_D09_BG313738LD02P012C02C081F1_073.ab1   242 
  454  C UCD004R_D09_BG313738LD02P012C02C081R1_073.ab1    45 
  470    UCD004F_D09_BG313738LD02P012C02C081F1_073.ab1   334 
Contig length: old 701, new 701

Contig length: old 701, new 701
New start: 0