No. words: 1079; after pruning: 1053


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.6 (1,1:377)  361  0.79 0.00 0.26  UCD004F_E09_BG313738LD03P012C02C081F1_071.ab1        1   378 (198)  C UCD004R_E09_BG313738LD03P012C02C081R1_071.ab1   (126)   377     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  178 nodes

 91 str. conn. components

Path
    1  C UCD004R_E09_BG313738LD03P012C02C081R1_071.ab1   503 
  271    UCD004F_E09_BG313738LD03P012C02C081F1_071.ab1   145 
  287  C UCD004R_E09_BG313738LD03P012C02C081R1_071.ab1   217 
  303    UCD004F_E09_BG313738LD03P012C02C081F1_071.ab1   177 
  319  C UCD004R_E09_BG313738LD03P012C02C081R1_071.ab1   185 
  340    UCD004F_E09_BG313738LD03P012C02C081F1_071.ab1   215 
  380  C UCD004R_E09_BG313738LD03P012C02C081R1_071.ab1   124 
  408    UCD004F_E09_BG313738LD03P012C02C081F1_071.ab1   283 
Contig length: old 701, new 701

Contig length: old 701, new 701
New start: 0