No. words: 893; after pruning: 853


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.1 (1,1:363)  360  0.00 0.00 0.00  UCD007F_C10_BG313738LD04P012C02P012C081F1_076.ab1        1   364 (131)  C UCD007R_C10_BG313738LD04P012C02P012C081R1_076.ab1   (34)   364     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  184 nodes

 94 str. conn. components

Path
    1  C UCD007R_C10_BG313738LD04P012C02P012C081R1_076.ab1   398 
   38    UCD007F_C10_BG313738LD04P012C02P012C081F1_076.ab1     4 
  114  C UCD007R_C10_BG313738LD04P012C02P012C081R1_076.ab1   285 
  118    UCD007F_C10_BG313738LD04P012C02P012C081F1_076.ab1    84 
  134  C UCD007R_C10_BG313738LD04P012C02P012C081R1_076.ab1   265 
  142    UCD007F_C10_BG313738LD04P012C02P012C081F1_076.ab1   108 
  370  C UCD007R_C10_BG313738LD04P012C02P012C081R1_076.ab1    29 
  374    UCD007F_C10_BG313738LD04P012C02P012C081F1_076.ab1   340 
Contig length: old 529, new 529

Contig length: old 529, new 529
New start: 0 
S Change at: 401; seg lengths: entry 1, contig 1