No. words: 1052; after pruning: 1012


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.9 (1,1:357)  355  0.00 0.00 0.00  UCD007F_D10_BG313738LD05P012C02P012C081F1_074.ab1        1   358 (122)  C UCD007R_D10_BG313738LD05P012C02P012C081R1_074.ab1   (214)   358     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C UCD007R_D10_BG313738LD05P012C02P012C081R1_074.ab1   572 
  414    UCD007F_D10_BG313738LD05P012C02P012C081F1_074.ab1   200 
Contig length: old 694, new 694

Contig length: old 694, new 694
New start: 0 
S Change at: 577; seg lengths: entry 1, contig 1