No. words: 1028; after pruning: 1002


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.9 (1,1:356)  354  0.00 0.00 0.00  UCD007F_E10_BG313738LD06P012C02P012C081F1_072.ab1        1   357 (134)  C UCD007R_E10_BG313738LD06P012C02P012C081R1_072.ab1   (180)   357     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C UCD007R_E10_BG313738LD06P012C02P012C081R1_072.ab1   537 
  196    UCD007F_E10_BG313738LD06P012C02P012C081F1_072.ab1    16 
  200  C UCD007R_E10_BG313738LD06P012C02P012C081R1_072.ab1   338 
  204    UCD007F_E10_BG313738LD06P012C02P012C081F1_072.ab1    24 
  212  C UCD007R_E10_BG313738LD06P012C02P012C081R1_072.ab1   326 
  264    UCD007F_E10_BG313738LD06P012C02P012C081F1_072.ab1    84 
  268  C UCD007R_E10_BG313738LD06P012C02P012C081R1_072.ab1   270 
  288    UCD007F_E10_BG313738LD06P012C02P012C081F1_072.ab1   108 
  308  C UCD007R_E10_BG313738LD06P012C02P012C081R1_072.ab1   230 
  376    UCD007F_E10_BG313738LD06P012C02P012C081F1_072.ab1   196 
Contig length: old 671, new 671

Contig length: old 671, new 671
New start: 0