No. words: 297; after pruning: 271


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 0.2 (1,1:1)   95 11.11 0.00 0.00  UCD007F_H10_BG313738LD09P012C02P012C081F1_066.ab1        2   145 (3)    UCD007R_H10_BG313738LD09P012C02P012C081R1_066.ab1        1   144 (5) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  34 nodes

 19 str. conn. components

Path
    1    UCD007F_H10_BG313738LD09P012C02P012C081F1_066.ab1     1 
   22    UCD007R_H10_BG313738LD09P012C02P012C081R1_066.ab1    21 
  102    UCD007F_H10_BG313738LD09P012C02P012C081F1_066.ab1   102 
  110    UCD007R_H10_BG313738LD09P012C02P012C081R1_066.ab1   109 
  138    UCD007F_H10_BG313738LD09P012C02P012C081F1_066.ab1   138 
  142    UCD007R_H10_BG313738LD09P012C02P012C081R1_066.ab1   141 
Contig length: old 150, new 150

Contig length: old 150, new 150
New start: 0 
S Change at: 10; seg lengths: entry 1, contig 1