No. words: 1377; after pruning: 1351


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.4 (1,1:1038)  326  0.30 0.00 0.00  UCD019F_A10_BG497590AT01P028E02E081F1_080.ab1      269   606 (0)  C UCD019R_A10_BG497590AT01P028E02E081R1_080.ab1   (0)   771   434 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  168 nodes

 86 str. conn. components

Path
    1    UCD019F_A10_BG497590AT01P028E02E081F1_080.ab1     1 
  352  C UCD019R_A10_BG497590AT01P028E02E081R1_080.ab1   688 
  356    UCD019F_A10_BG497590AT01P028E02E081F1_080.ab1   356 
  404  C UCD019R_A10_BG497590AT01P028E02E081R1_080.ab1   636 
  416    UCD019F_A10_BG497590AT01P028E02E081F1_080.ab1   416 
  428  C UCD019R_A10_BG497590AT01P028E02E081R1_080.ab1   612 
  436    UCD019F_A10_BG497590AT01P028E02E081F1_080.ab1   436 
  440  C UCD019R_A10_BG497590AT01P028E02E081R1_080.ab1   600 
Contig length: old 1039, new 1039

Contig length: old 1039, new 1039
New start: 0