No. words: 1689; after pruning: 1663


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:1072)  605  0.00 0.00 0.00  UCD019F_A11_BG497590LD07P028E02E081F1_095.ab1      227   842 (0)  C UCD019R_A11_BG497590LD07P028E02E081R1_095.ab1   (0)   847   232 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1    UCD019F_A11_BG497590LD07P028E02E081F1_095.ab1     1 
  446  C UCD019R_A11_BG497590LD07P028E02E081R1_095.ab1   628 
  450    UCD019F_A11_BG497590LD07P028E02E081F1_095.ab1   450 
  458  C UCD019R_A11_BG497590LD07P028E02E081R1_095.ab1   616 
  534    UCD019F_A11_BG497590LD07P028E02E081F1_095.ab1   534 
  538  C UCD019R_A11_BG497590LD07P028E02E081R1_095.ab1   536 
  578    UCD019F_A11_BG497590LD07P028E02E081F1_095.ab1   578 
  582  C UCD019R_A11_BG497590LD07P028E02E081R1_095.ab1   492 
Contig length: old 1073, new 1073

Contig length: old 1073, new 1073
New start: 0