No. words: 1020; after pruning: 994


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 7.1 (1,1:450)  428  1.12 0.00 0.00  UCD017F_E03_BG604910AS01P028E01E071F1_023.ab1        5   451 (66)  C UCD017R_E03_BG604910AS01P028E01E071R1_023.ab1   (56)   447     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C UCD017R_E03_BG604910AS01P028E01E071R1_023.ab1   503 
  166    UCD017F_E03_BG604910AS01P028E01E071F1_023.ab1   114 
  170  C UCD017R_E03_BG604910AS01P028E01E071R1_023.ab1   334 
  194    UCD017F_E03_BG604910AS01P028E01E071F1_023.ab1   142 
  202  C UCD017R_E03_BG604910AS01P028E01E071R1_023.ab1   302 
  214    UCD017F_E03_BG604910AS01P028E01E071F1_023.ab1   162 
  286  C UCD017R_E03_BG604910AS01P028E01E071R1_023.ab1   218 
  354    UCD017F_E03_BG604910AS01P028E01E071F1_023.ab1   302 
  370  C UCD017R_E03_BG604910AS01P028E01E071R1_023.ab1   134 
  374    UCD017F_E03_BG604910AS01P028E01E071F1_023.ab1   322 
  382  C UCD017R_E03_BG604910AS01P028E01E071R1_023.ab1   122 
  392    UCD017F_E03_BG604910AS01P028E01E071F1_023.ab1   340 
  396  C UCD017R_E03_BG604910AS01P028E01E071R1_023.ab1   108 
  404    UCD017F_E03_BG604910AS01P028E01E071F1_023.ab1   352 
  408  C UCD017R_E03_BG604910AS01P028E01E071R1_023.ab1    96 
  416    UCD017F_E03_BG604910AS01P028E01E071F1_023.ab1   364 
  428  C UCD017R_E03_BG604910AS01P028E01E071R1_023.ab1    76 
  456    UCD017F_E03_BG604910AS01P028E01E071F1_023.ab1   404 
  480  C UCD017R_E03_BG604910AS01P028E01E071R1_023.ab1    24 
  492    UCD017F_E03_BG604910AS01P028E01E071F1_023.ab1   440 
Contig length: old 569, new 569

Contig length: old 569, new 569
New start: 0