No. words: 1274; after pruning: 1248


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.7 (1,1:481)  478  0.00 0.00 0.00  UCD017F_C04_BG604910LD03P028E01E071F1_028.ab1        1   482 (166)  C UCD017R_C04_BG604910LD03P028E01E071R1_028.ab1   (144)   482     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C UCD017R_C04_BG604910LD03P028E01E071R1_028.ab1   626 
  156    UCD017F_C04_BG604910LD03P028E01E071F1_028.ab1    12 
  164  C UCD017R_C04_BG604910LD03P028E01E071R1_028.ab1   463 
  176    UCD017F_C04_BG604910LD03P028E01E071F1_028.ab1    32 
  228  C UCD017R_C04_BG604910LD03P028E01E071R1_028.ab1   399 
  232    UCD017F_C04_BG604910LD03P028E01E071F1_028.ab1    88 
  248  C UCD017R_C04_BG604910LD03P028E01E071R1_028.ab1   379 
  252    UCD017F_C04_BG604910LD03P028E01E071F1_028.ab1   108 
  388  C UCD017R_C04_BG604910LD03P028E01E071R1_028.ab1   239 
  516    UCD017F_C04_BG604910LD03P028E01E071F1_028.ab1   372 
  524  C UCD017R_C04_BG604910LD03P028E01E071R1_028.ab1   103 
  528    UCD017F_C04_BG604910LD03P028E01E071F1_028.ab1   384 
  532  C UCD017R_C04_BG604910LD03P028E01E071R1_028.ab1    95 
  552    UCD017F_C04_BG604910LD03P028E01E071F1_028.ab1   408 
  564  C UCD017R_C04_BG604910LD03P028E01E071R1_028.ab1    63 
  572    UCD017F_C04_BG604910LD03P028E01E071F1_028.ab1   428 
  584  C UCD017R_C04_BG604910LD03P028E01E071R1_028.ab1    43 
  588    UCD017F_C04_BG604910LD03P028E01E071F1_028.ab1   444 
Contig length: old 792, new 792

Contig length: old 792, new 792
New start: 0