No. words: 1207; after pruning: 1181


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:471)  465  0.21 0.00 0.00  UCD017F_D04_BG604910LD04P028E01E071F1_026.ab1        1   472 (115)  C UCD017R_D04_BG604910LD04P028E01E071R1_026.ab1   (148)   472     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C UCD017R_D04_BG604910LD04P028E01E071R1_026.ab1   620 
  156    UCD017F_D04_BG604910LD04P028E01E071F1_026.ab1     8 
  160  C UCD017R_D04_BG604910LD04P028E01E071R1_026.ab1   461 
  220    UCD017F_D04_BG604910LD04P028E01E071F1_026.ab1    72 
  228  C UCD017R_D04_BG604910LD04P028E01E071R1_026.ab1   393 
  244    UCD017F_D04_BG604910LD04P028E01E071F1_026.ab1    96 
  248  C UCD017R_D04_BG604910LD04P028E01E071R1_026.ab1   373 
  256    UCD017F_D04_BG604910LD04P028E01E071F1_026.ab1   108 
  392  C UCD017R_D04_BG604910LD04P028E01E071R1_026.ab1   229 
  616    UCD017F_D04_BG604910LD04P028E01E071F1_026.ab1   468 
Contig length: old 735, new 735

Contig length: old 735, new 735
New start: 0