No. words: 1112; after pruning: 1086


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:480)  463  1.04 0.00 0.00  UCD017F_B05_BG604910LD10P028E01E071F1_045.ab1        1   481 (7)  C UCD017R_B05_BG604910LD10P028E01E071R1_045.ab1   (143)   481     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C UCD017R_B05_BG604910LD10P028E01E071R1_045.ab1   624 
  223    UCD017F_B05_BG604910LD10P028E01E071F1_045.ab1    80 
  227  C UCD017R_B05_BG604910LD10P028E01E071R1_045.ab1   398 
  253    UCD017F_B05_BG604910LD10P028E01E071F1_045.ab1   110 
  265  C UCD017R_B05_BG604910LD10P028E01E071R1_045.ab1   360 
  269    UCD017F_B05_BG604910LD10P028E01E071F1_045.ab1   126 
  337  C UCD017R_B05_BG604910LD10P028E01E071R1_045.ab1   288 
  341    UCD017F_B05_BG604910LD10P028E01E071F1_045.ab1   198 
  349  C UCD017R_B05_BG604910LD10P028E01E071R1_045.ab1   276 
  357    UCD017F_B05_BG604910LD10P028E01E071F1_045.ab1   214 
  393  C UCD017R_B05_BG604910LD10P028E01E071R1_045.ab1   232 
  409    UCD017F_B05_BG604910LD10P028E01E071F1_045.ab1   266 
  413  C UCD017R_B05_BG604910LD10P028E01E071R1_045.ab1   212 
  595    UCD017F_B05_BG604910LD10P028E01E071F1_045.ab1   452 
  599  C UCD017R_B05_BG604910LD10P028E01E071R1_045.ab1    26 
  620    UCD017F_B05_BG604910LD10P028E01E071F1_045.ab1   477 
Contig length: old 631, new 631

Contig length: old 631, new 631
New start: 0