No. words: 552; after pruning: 526


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.5 (1,1:307)  180  2.05 0.00 0.00  UCD033F_C09_BG604910Td01P028E01P036G101F1_075.ab1        1   195 (0)  C UCD033R_C09_BG604910Td01P028E01P036G101R1_075.ab1   (49)   308   114 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  86 nodes

 45 str. conn. components

Path
    1  C UCD033R_C09_BG604910Td01P028E01P036G101R1_075.ab1   357 
   53    UCD033F_C09_BG604910Td01P028E01P036G101F1_075.ab1     4 
  154  C UCD033R_C09_BG604910Td01P028E01P036G101R1_075.ab1   204 
  158    UCD033F_C09_BG604910Td01P028E01P036G101F1_075.ab1   109 
  162  C UCD033R_C09_BG604910Td01P028E01P036G101R1_075.ab1   196 
  166    UCD033F_C09_BG604910Td01P028E01P036G101F1_075.ab1   117 
  170  C UCD033R_C09_BG604910Td01P028E01P036G101R1_075.ab1   188 
  174    UCD033F_C09_BG604910Td01P028E01P036G101F1_075.ab1   125 
  206  C UCD033R_C09_BG604910Td01P028E01P036G101R1_075.ab1   152 
Contig length: old 357, new 357

Contig length: old 357, new 357
New start: 0