No. words: 688; after pruning: 662


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    2   -1.9 -1.9 (1,1:291)  237  4.83 0.00 0.34  UCD033F_E09_BG604910Td03P028E01P036G101F1_071.ab1        1   290 (59)  C UCD033R_E09_BG604910Td03P028E01P036G101R1_071.ab1   (48)   291     3 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.9       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  108 nodes

 56 str. conn. components

Path
    1  C UCD033R_E09_BG604910Td03P028E01P036G101R1_071.ab1   339 
   60    UCD033F_E09_BG604910Td03P028E01P036G101F1_071.ab1    12 
  288  C UCD033R_E09_BG604910Td03P028E01P036G101R1_071.ab1    52 
  329    UCD033F_E09_BG604910Td03P028E01P036G101F1_071.ab1   282 
Contig length: old 396, new 396

Contig length: old 396, new 397
New start: 0 
S Change at: 53; seg lengths: entry 4, contig 4
I Change at: 326; seg lengths: entry 1, contig 0