No. words: 1154; after pruning: 1128


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.8 (1,1:626)  455  0.63 0.00 0.00  UCD005F_G09_BG605258AS01P012H02H081F1_067.ab1      152   624 (54)  C UCD005R_G09_BG605258AS01P012H02H081R1_067.ab1   (0)   476     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1    UCD005F_G09_BG605258AS01P012H02H081F1_067.ab1     1 
  421  C UCD005R_G09_BG605258AS01P012H02H081R1_067.ab1   207 
  425    UCD005F_G09_BG605258AS01P012H02H081F1_067.ab1   425 
  449  C UCD005R_G09_BG605258AS01P012H02H081R1_067.ab1   179 
  461    UCD005F_G09_BG605258AS01P012H02H081F1_067.ab1   461 
  481  C UCD005R_G09_BG605258AS01P012H02H081R1_067.ab1   147 
  489    UCD005F_G09_BG605258AS01P012H02H081F1_067.ab1   489 
  521  C UCD005R_G09_BG605258AS01P012H02H081R1_067.ab1   107 
  525    UCD005F_G09_BG605258AS01P012H02H081F1_067.ab1   525 
  537  C UCD005R_G09_BG605258AS01P012H02H081R1_067.ab1    91 
  541    UCD005F_G09_BG605258AS01P012H02H081F1_067.ab1   541 
  553  C UCD005R_G09_BG605258AS01P012H02H081R1_067.ab1    75 
  561    UCD005F_G09_BG605258AS01P012H02H081F1_067.ab1   561 
  569  C UCD005R_G09_BG605258AS01P012H02H081R1_067.ab1    59 
  573    UCD005F_G09_BG605258AS01P012H02H081F1_067.ab1   573 
  577  C UCD005R_G09_BG605258AS01P012H02H081R1_067.ab1    51 
  617    UCD005F_G09_BG605258AS01P012H02H081F1_067.ab1   617 
Contig length: old 678, new 678

Contig length: old 678, new 678
New start: 0