No. words: 1302; after pruning: 1276


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.8 (1,1:631)  599  0.79 0.16 0.16  UCD005F_A10_BG605258AT01P012H02H081F1_080.ab1        1   632 (31)  C UCD005R_A10_BG605258AT01P012H02H081R1_080.ab1   (7)   632     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C UCD005R_A10_BG605258AT01P012H02H081R1_080.ab1   639 
   11    UCD005F_A10_BG605258AT01P012H02H081F1_080.ab1     4 
  269  C UCD005R_A10_BG605258AT01P012H02H081R1_080.ab1   370 
  393    UCD005F_A10_BG605258AT01P012H02H081F1_080.ab1   386 
  405  C UCD005R_A10_BG605258AT01P012H02H081R1_080.ab1   234 
  465    UCD005F_A10_BG605258AT01P012H02H081F1_080.ab1   458 
  469  C UCD005R_A10_BG605258AT01P012H02H081R1_080.ab1   170 
  489    UCD005F_A10_BG605258AT01P012H02H081F1_080.ab1   482 
  493  C UCD005R_A10_BG605258AT01P012H02H081R1_080.ab1   146 
  517    UCD005F_A10_BG605258AT01P012H02H081F1_080.ab1   510 
  525  C UCD005R_A10_BG605258AT01P012H02H081R1_080.ab1   114 
  533    UCD005F_A10_BG605258AT01P012H02H081F1_080.ab1   526 
  541  C UCD005R_A10_BG605258AT01P012H02H081R1_080.ab1    98 
  549    UCD005F_A10_BG605258AT01P012H02H081F1_080.ab1   542 
  557  C UCD005R_A10_BG605258AT01P012H02H081R1_080.ab1    82 
  561    UCD005F_A10_BG605258AT01P012H02H081F1_080.ab1   554 
  569  C UCD005R_A10_BG605258AT01P012H02H081R1_080.ab1    70 
  577    UCD005F_A10_BG605258AT01P012H02H081F1_080.ab1   570 
  593  C UCD005R_A10_BG605258AT01P012H02H081R1_080.ab1    46 
  609    UCD005F_A10_BG605258AT01P012H02H081F1_080.ab1   602 
Contig length: old 670, new 670

Contig length: old 670, new 671
New start: 0 
I Change at: 30; seg lengths: entry 1, contig 0