No. words: 1343; after pruning: 1317


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:615)  603  0.00 0.16 0.00  UCD005F_B10_BG605258AT02P012H02H081F1_078.ab1        1   616 (60)  C UCD005R_B10_BG605258AT02P012H02H081R1_078.ab1   (50)   617     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C UCD005R_B10_BG605258AT02P012H02H081R1_078.ab1   667 
   74    UCD005F_B10_BG605258AT02P012H02H081F1_078.ab1    23 
   90  C UCD005R_B10_BG605258AT02P012H02H081R1_078.ab1   578 
   94    UCD005F_B10_BG605258AT02P012H02H081F1_078.ab1    43 
  102  C UCD005R_B10_BG605258AT02P012H02H081R1_078.ab1   566 
  106    UCD005F_B10_BG605258AT02P012H02H081F1_078.ab1    55 
  110  C UCD005R_B10_BG605258AT02P012H02H081R1_078.ab1   558 
  114    UCD005F_B10_BG605258AT02P012H02H081F1_078.ab1    63 
  118  C UCD005R_B10_BG605258AT02P012H02H081R1_078.ab1   550 
  126    UCD005F_B10_BG605258AT02P012H02H081F1_078.ab1    75 
  150  C UCD005R_B10_BG605258AT02P012H02H081R1_078.ab1   518 
  182    UCD005F_B10_BG605258AT02P012H02H081F1_078.ab1   131 
  310  C UCD005R_B10_BG605258AT02P012H02H081R1_078.ab1   358 
  382    UCD005F_B10_BG605258AT02P012H02H081F1_078.ab1   331 
  458  C UCD005R_B10_BG605258AT02P012H02H081R1_078.ab1   210 
  506    UCD005F_B10_BG605258AT02P012H02H081F1_078.ab1   455 
  578  C UCD005R_B10_BG605258AT02P012H02H081R1_078.ab1    90 
  590    UCD005F_B10_BG605258AT02P012H02H081F1_078.ab1   539 
Contig length: old 727, new 727

Contig length: old 727, new 727
New start: 0