No. words: 1048; after pruning: 1022


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:469)  450  0.43 0.00 0.21  UCD021F_D05_BG605258Sn24P025C05P012H081F2_041.ab1        1   470 (49)  C UCD021R_D05_BG605258Sn24P025C05P012H081R2_041.ab1   (60)   469     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C UCD021R_D05_BG605258Sn24P025C05P012H081R2_041.ab1   529 
  337    UCD021F_D05_BG605258Sn24P025C05P012H081F2_041.ab1   277 
  341  C UCD021R_D05_BG605258Sn24P025C05P012H081R2_041.ab1   189 
  473    UCD021F_D05_BG605258Sn24P025C05P012H081F2_041.ab1   413 
  481  C UCD021R_D05_BG605258Sn24P025C05P012H081R2_041.ab1    49 
  513    UCD021F_D05_BG605258Sn24P025C05P012H081F2_041.ab1   453 
Contig length: old 578, new 579

Contig length: old 579, new 579
New start: 0