No. words: 1025; after pruning: 999


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:447)  426  1.12 0.00 0.00  UCD021F_E05_BG605258Sn25P025C05P012H081F2_039.ab1        1   448 (67)  C UCD021R_E05_BG605258Sn25P025C05P012H081R2_039.ab1   (62)   448     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C UCD021R_E05_BG605258Sn25P025C05P012H081R2_039.ab1   510 
   69    UCD021F_E05_BG605258Sn25P025C05P012H081F2_039.ab1     7 
   85  C UCD021R_E05_BG605258Sn25P025C05P012H081R2_039.ab1   426 
  148    UCD021F_E05_BG605258Sn25P025C05P012H081F2_039.ab1    86 
  152  C UCD021R_E05_BG605258Sn25P025C05P012H081R2_039.ab1   359 
  506    UCD021F_E05_BG605258Sn25P025C05P012H081F2_039.ab1   444 
Contig length: old 577, new 577

Contig length: old 577, new 577
New start: 0 
S Change at: 132; seg lengths: entry 1, contig 1