No. words: 1102; after pruning: 1076


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:474)  467  0.00 0.00 0.00  UCD014F_D11_BG605258Sn32P025A05P012H081F1_089.ab1        1   475 (72)  C UCD014R_D11_BG605258Sn32P025A05P012H081R1_089.ab1   (80)   475     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C UCD014R_D11_BG605258Sn32P025A05P012H081R1_089.ab1   555 
   84    UCD014F_D11_BG605258Sn32P025A05P012H081F1_089.ab1     4 
   88  C UCD014R_D11_BG605258Sn32P025A05P012H081R1_089.ab1   468 
   96    UCD014F_D11_BG605258Sn32P025A05P012H081F1_089.ab1    16 
  140  C UCD014R_D11_BG605258Sn32P025A05P012H081R1_089.ab1   416 
  148    UCD014F_D11_BG605258Sn32P025A05P012H081F1_089.ab1    68 
  152  C UCD014R_D11_BG605258Sn32P025A05P012H081R1_089.ab1   404 
  188    UCD014F_D11_BG605258Sn32P025A05P012H081F1_089.ab1   108 
  196  C UCD014R_D11_BG605258Sn32P025A05P012H081R1_089.ab1   360 
  204    UCD014F_D11_BG605258Sn32P025A05P012H081F1_089.ab1   124 
  208  C UCD014R_D11_BG605258Sn32P025A05P012H081R1_089.ab1   348 
  392    UCD014F_D11_BG605258Sn32P025A05P012H081F1_089.ab1   312 
  404  C UCD014R_D11_BG605258Sn32P025A05P012H081R1_089.ab1   152 
  412    UCD014F_D11_BG605258Sn32P025A05P012H081F1_089.ab1   332 
  416  C UCD014R_D11_BG605258Sn32P025A05P012H081R1_089.ab1   140 
  428    UCD014F_D11_BG605258Sn32P025A05P012H081F1_089.ab1   348 
  432  C UCD014R_D11_BG605258Sn32P025A05P012H081R1_089.ab1   124 
  440    UCD014F_D11_BG605258Sn32P025A05P012H081F1_089.ab1   360 
  444  C UCD014R_D11_BG605258Sn32P025A05P012H081R1_089.ab1   112 
  464    UCD014F_D11_BG605258Sn32P025A05P012H081F1_089.ab1   384 
  480  C UCD014R_D11_BG605258Sn32P025A05P012H081R1_089.ab1    76 
  488    UCD014F_D11_BG605258Sn32P025A05P012H081F1_089.ab1   408 
  512  C UCD014R_D11_BG605258Sn32P025A05P012H081R1_089.ab1    44 
  520    UCD014F_D11_BG605258Sn32P025A05P012H081F1_089.ab1   440 
Contig length: old 627, new 627

Contig length: old 627, new 627
New start: 0