No. words: 1190; after pruning: 1151


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:458)  448  0.22 0.00 0.00  UCD021F_H05_BG605258Sn32P025C05P012H081F2_033.ab1        1   459 (65)  C UCD021R_H05_BG605258Sn32P025C05P012H081R2_033.ab1   (69)   459     1 *
Merge:(0)    0    0.0 2.9 (2,1:-6)  132  0.00 0.00 0.00  UCD021F_H05_BG605258Sn32P025C05P012H081F2_033.ab1        1   132 (392)    UCD011F_B09_BG605258Sn32P025C05P012H081F1_077.ab1        7   138 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       3 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  340 nodes

 145 str. conn. components

Path
    1  C UCD021R_H05_BG605258Sn32P025C05P012H081R2_033.ab1   528 
   72    UCD011F_B09_BG605258Sn32P025C05P012H081F1_077.ab1     9 
   80  C UCD021R_H05_BG605258Sn32P025C05P012H081R2_033.ab1   449 
  140    UCD011F_B09_BG605258Sn32P025C05P012H081F1_077.ab1    77 
  144  C UCD021R_H05_BG605258Sn32P025C05P012H081R2_033.ab1   385 
  158    UCD021F_H05_BG605258Sn32P025C05P012H081F2_033.ab1    89 
  162  C UCD021R_H05_BG605258Sn32P025C05P012H081R2_033.ab1   367 
  174    UCD021F_H05_BG605258Sn32P025C05P012H081F2_033.ab1   105 
  178  C UCD021R_H05_BG605258Sn32P025C05P012H081R2_033.ab1   351 
  266    UCD021F_H05_BG605258Sn32P025C05P012H081F2_033.ab1   197 
  270  C UCD021R_H05_BG605258Sn32P025C05P012H081R2_033.ab1   259 
  522    UCD021F_H05_BG605258Sn32P025C05P012H081F2_033.ab1   453 
Contig length: old 593, new 593

Contig length: old 593, new 593
New start: 0