No. words: 1077; after pruning: 1051


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.8 (1,1:618)  423  0.46 0.00 0.00  UCD005F_F09_BG605258TU02P012H02H081F1_069.ab1      183   619 (20)  C UCD005R_F09_BG605258TU02P012H02H081R1_069.ab1   (1)   437     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1    UCD005F_F09_BG605258TU02P012H02H081F1_069.ab1     1 
  480  C UCD005R_F09_BG605258TU02P012H02H081R1_069.ab1   140 
  484    UCD005F_F09_BG605258TU02P012H02H081F1_069.ab1   484 
  536  C UCD005R_F09_BG605258TU02P012H02H081R1_069.ab1    84 
  540    UCD005F_F09_BG605258TU02P012H02H081F1_069.ab1   540 
  552  C UCD005R_F09_BG605258TU02P012H02H081R1_069.ab1    68 
  560    UCD005F_F09_BG605258TU02P012H02H081F1_069.ab1   560 
  568  C UCD005R_F09_BG605258TU02P012H02H081R1_069.ab1    52 
  604    UCD005F_F09_BG605258TU02P012H02H081F1_069.ab1   604 
  608  C UCD005R_F09_BG605258TU02P012H02H081R1_069.ab1    12 
  616    UCD005F_F09_BG605258TU02P012H02H081F1_069.ab1   616 
Contig length: old 639, new 639

Contig length: old 639, new 639
New start: 0