No. words: 1065; after pruning: 1039


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:483)  467  0.21 0.00 0.21  UCD021F_G03_BG605258Ta11P025C05P012H081F2_019.ab1        1   484 (49)  C UCD021R_G03_BG605258Ta11P025C05P012H081R2_019.ab1   (49)   483     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C UCD021R_G03_BG605258Ta11P025C05P012H081R2_019.ab1   532 
  516    UCD021F_G03_BG605258Ta11P025C05P012H081F2_019.ab1   467 
Contig length: old 581, new 582

Contig length: old 582, new 582
New start: 0