No. words: 1054; after pruning: 1028


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:469)  453  0.21 0.00 0.21  UCD021F_H03_BG605258Ta12P025C05P012H081F2_017.ab1        1   470 (50)  C UCD021R_H03_BG605258Ta12P025C05P012H081R2_017.ab1   (65)   469     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C UCD021R_H03_BG605258Ta12P025C05P012H081R2_017.ab1   534 
  262    UCD021F_H03_BG605258Ta12P025C05P012H081F2_017.ab1   197 
  266  C UCD021R_H03_BG605258Ta12P025C05P012H081R2_017.ab1   269 
  406    UCD021F_H03_BG605258Ta12P025C05P012H081F2_017.ab1   341 
  410  C UCD021R_H03_BG605258Ta12P025C05P012H081R2_017.ab1   125 
  518    UCD021F_H03_BG605258Ta12P025C05P012H081F2_017.ab1   453 
Contig length: old 584, new 585

Contig length: old 585, new 585
New start: 0