No. words: 1052; after pruning: 1026


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.1 (1,1:485)  465  0.21 0.21 0.21  UCD021F_C04_BG605258Ta15P025C05P012H081F2_028.ab1        1   486 (37)  C UCD021R_C04_BG605258Ta15P025C05P012H081R2_028.ab1   (43)   486     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C UCD021R_C04_BG605258Ta15P025C05P012H081R2_028.ab1   529 
  522    UCD021F_C04_BG605258Ta15P025C05P012H081F2_028.ab1   479 
Contig length: old 566, new 566

Contig length: old 566, new 567
New start: 0 
I Change at: 521; seg lengths: entry 1, contig 0